Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08702.8257625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08712.99245United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08732.873375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08742.7053625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08762.8429625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08772.8152United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08782.58235United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.6326125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08802.968625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08812.35745United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08821.94205United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08832.250275United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08841.97645United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08852.349475United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08862.0597875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08872.4394625United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08882.4235875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.1113875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08912.1788625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.0835875United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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