Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08252.7013875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08262.786075United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08272.7939875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08282.9792United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08311.8706125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08322.3084875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08332.419625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08342.592925United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.20795United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08362.29395United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08372.2992375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08392.53605United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08402.5585375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08412.59425United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08422.7847375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08432.3944875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08442.4738625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08452.5902625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08462.7966375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08472.7556125United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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