Details for Phenotype: Seed area (ID: 67)

Phenotype ID:
67
Name:
Seed area
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm2
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Area of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08487.5017125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08518.904875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08529.777375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085310.826575United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085411.24995United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085511.33885United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08569.47715United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08579.33905United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08589.7895125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085911.0680625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08609.4632125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN086113.65745United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086211.48915714United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086313.4796875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086412.1211625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086510.9910375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086610.35655United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086711.3682United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086811.1741125United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086911.7826375United StatesCalifornia38.7892-119.9363
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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