Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_62ANN142015.7416United StatesIowa42.24842-96.05867
Helianthus annuusANN_62ANN141912.38205United StatesIowa42.24842-96.05867
Helianthus annuusANN_61ANN140812.5847United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140710.7777625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140612.5653United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140513.1250625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140412.6683375United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140313.6676375United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140211.9702625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN140110.779175United StatesTexas27.77652-97.66801
Helianthus annuusANN_60ANN140012.5687625United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139913.1315375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139812.130225United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139711.3495375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139612.65945United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139511.29445United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139411.38655United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139312.9514875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139211.2040375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN139113.182975United StatesTexas27.28522-97.66729
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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