Details for Phenotype: RGB proportion green (ID: 57)

Phenotype ID:
57
Name:
RGB proportion green
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Proportion of green in average leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09850.415517914United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_11ANN09070.421337197United StatesArizona35.19566-114.06666
Helianthus annuusANN_53ANN13260.424375204United StatesTexas31.03955-103.13683
Helianthus annuusANN_45ANN12460.424695316United StatesTexas28.63085-100.1189
Helianthus annuusANN_37ANN11700.424740188United StatesColorado40.48679-105.09619
Helianthus annuusANN_39ANN11820.424882947United StatesKansas37.45911-97.9179
Helianthus annuusANN_13ANN09270.425829918United StatesArizona34.75056-112.01697
Helianthus annuusANN_49ANN12840.425971324United StatesArizona31.43996-110.10544
Helianthus annuusANN_38ANN11740.427118622United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11730.427334462United StatesKansas38.44118-98.63231
Helianthus annuusANN_52ANN13160.42786224United StatesTexas31.13312-104.02012
Helianthus annuusANN_41ANN12070.42836588United StatesOklahoma36.80874-98.22242
Helianthus annuusANN_51ANN13100.429265346United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_48ANN12780.42954611United StatesArizona31.5081-111.01274
Helianthus annuusANN_06ANN08540.429669119United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_40ANN11940.430006526United StatesKansas37.23327-98.66459
Helianthus annuusANN_19ANN09870.430739012United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_49ANN12890.431031311United StatesArizona31.43996-110.10544
Helianthus annuusANN_41ANN12080.431976208United StatesOklahoma36.80874-98.22242
Helianthus annuusANN_50ANN12920.432636065United StatesNew Mexico32.17943-108.38541
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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